Sorry the title should be
Is there a way to make cgi script work under htdocs?

I need cgi script to be able to function under htdocs directory. I have worked with other service providers and most of the time I am able to place cgi script anywhere in the server and I assumed I can do the same with NetSol but it seems that it is not the case.
The reason is that I purchased a SSL and assigned to a sub-domain (it's being validated now) directory under htdocs and there is a form that uses a cgi script to send out under that sub-domain. Once the information is sent to the cgi script in the cgi-bin which is located outside of the sub-domain directory, I assume that SSL is no longer in effect.
Is there a way to place cgi script inside the subdomain folder and make it work?

The cgi-bin folder is mapped on the server so that it appears as if it is within whatever folder the domain (or subdomain) name is pointed to. The cgi script would be accessed by https://domain.com/cgi-bin/script.cgi so it would be covered by your certificate.